@article{shamir2004cluster,
  title={Cluster graph modification problems},
  author={Shamir, Ron and Sharan, Roded and Tsur, Dekel},
  journal={Discrete Applied Mathematics},
  volume={144},
  number={1},
  pages={173--182},
  year={2004},
  publisher={Elsevier}
}
@article{bansal2004correlation,
  title={Correlation clustering},
  author={Bansal, Nikhil and Blum, Avrim and Chawla, Shuchi},
  journal={Machine Learning},
  volume={56},
  number={1-3},
  pages={89--113},
  year={2004},
  publisher={Springer}
}

@article{wittkop2010partitioning,
  title={Partitioning biological data with transitivity clustering},
  author={Wittkop, Tobias and Emig, Dorothea and Lange, Sita and Rahmann, Sven and Albrecht, Mario and Morris, John H and B{\"o}cker, Sebastian and Stoye, Jens and Baumbach, Jan},
  journal={Nature methods},
  volume={7},
  number={6},
  pages={419--420},
  year={2010},
  publisher={Nature Publishing Group}
}

@article{bocker2009going,
  title={Going weighted: Parameterized algorithms for cluster editing},
  author={B{\"o}cker, Sebastian and Briesemeister, Sebastian and Bui, Quang Bao Anh and Tru{\ss}, Anke},
  journal={Theoretical Computer Science},
  volume={410},
  number={52},
  pages={5467--5480},
  year={2009},
  publisher={Elsevier}
}

@article{guo2009more,
  title={A more effective linear kernelization for cluster editing},
  author={Guo, Jiong},
  journal={Theoretical Computer Science},
  volume={410},
  number={8},
  pages={718--726},
  year={2009},
  publisher={Elsevier}
}

@incollection{cao2010cluster,
  title={Cluster editing: Kernelization based on edge cuts},
  author={Cao, Yixin and Chen, Jianer},
  booktitle={Parameterized and Exact Computation},
  pages={60--71},
  year={2010},
  publisher={Springer}
}

@article{chen20122,
  title={A 2\textit{k} kernel for the cluster editing problem},
  author={Chen, Jianer and Meng, Jie},
  journal={Journal of Computer and System Sciences},
  volume={78},
  number={1},
  pages={211--220},
  year={2012},
  publisher={Elsevier}
}

@inproceedings{fellows2007efficient,
  title={Efficient parameterized preprocessing for cluster editing},
  author={Fellows, Michael and Langston, Michael and Rosamond, Frances and Shaw, Peter},
  booktitle={Fundamentals of Computation Theory},
  pages={312--321},
  year={2007},
  organization={Springer}
}

@article{ailon2010improved,
  title={An improved algorithm for bipartite correlation clustering},
  author={Ailon, Nir and Avigdor-Elgrabli, Noa and Liberty, Edo},
  journal={arXiv preprint arXiv:1012.3011},
  year={2010}
}

@techreport{van2005deterministic,
  title={Deterministic approximation algorithms for ranking and clustering problems},
  author={van Zuylen, Anke},
  year={2005},
  institution={Technical Report 1431, School of Operations Research and Industrial Engineering, Cornell University, Ithaca, NY}
}


@article{wittkop2011comprehensive,
  title={Comprehensive cluster analysis with Transitivity Clustering},
  author={Wittkop, Tobias and Emig, Dorothea and Truss, Anke and Albrecht, Mario and B{\"o}cker, Sebastian and Baumbach, Jan},
  journal={Nature protocols},
  volume={6},
  number={3},
  pages={285--295},
  year={2011},
  publisher={Nature Publishing Group}
}


@article{wittkop2007large,
  title={Large scale clustering of protein sequences with FORCE-A layout based heuristic for weighted cluster editing},
  author={Wittkop, Tobias and Baumbach, Jan and Lobo, Francisco P and Rahmann, Sven},
  journal={BMC bioinformatics},
  volume={8},
  number={1},
  pages={396},
  year={2007},
  publisher={BioMed Central Ltd}
}


@article{guo2010more,
  title={A more relaxed model for graph-based data clustering: s-plex cluster editing},
  author={Guo, Jiong and Komusiewicz, Christian and Niedermeier, Rolf and Uhlmann, Johannes},
  journal={SIAM Journal on Discrete Mathematics},
  volume={24},
  number={4},
  pages={1662--1683},
  year={2010},
  publisher={SIAM}
}

@inproceedings{cheng2000biclustering,
  title={Biclustering of expression data.},
  author={Cheng, Yizong and Church, George M},
  booktitle={Ismb},
  volume={8},
  pages={93--103},
  year={2000}
}


@article{sun2012integrated,
  title={Integrated simultaneous analysis of different biomedical data types with exact weighted bi-cluster editing},
  author={Sun, Peng and Guo, Jiong and Baumbach, Jan},
  journal={Journal of Integrative Bioinformatics},
  volume={9},
  number={2},
  pages={197},
  year={2012}
}

@article{harpaz2010biclustering,
  title={Biclustering of adverse drug events in the FDA's spontaneous reporting system},
  author={Harpaz, Rave and Perez, Hector and Chase, Herbert S and Rabadan, Raul and Hripcsak, George and Friedman, Carol},
  journal={Clinical Pharmacology \& Therapeutics},
  volume={89},
  number={2},
  pages={243--250},
  year={2010},
  publisher={Nature Publishing Group}
}
@article{seidman1978graph,
  title={A graph-theoretic generalization of the clique concept*},
  author={Seidman, Stephen B and Foster, Brian L},
  journal={Journal of Mathematical Sociology},
  volume={6},
  number={1},
  pages={139--154},
  year={1978},
  publisher={Taylor \& Francis}
}
@misc{fellows1999parameterized,
  title={Parameterized complexity},
  author={Fellows, Michael R and Downey, RG},
  year={1999},
  publisher={Springer-Verlag, New York}
}
@article{yu2006predicting,
  title={Predicting interactions in protein networks by completing defective cliques},
  author={Yu, Haiyuan and Paccanaro, Alberto and Trifonov, Valery and Gerstein, Mark},
  journal={Bioinformatics},
  volume={22},
  number={7},
  pages={823--829},
  year={2006},
  publisher={Oxford Univ Press}
}

@book{niedermeier2006invitation,
  title={Invitation to fixed-parameter algorithms},
  author={Niedermeier, Rolf},
  volume={3},
  year={2006},
  publisher={Oxford University Press Oxford}
}




@article{guo2011editing,
  title={Editing graphs into disjoint unions of dense clusters},
  author={Guo, Jiong and Kanj, Iyad A and Komusiewicz, Christian and Uhlmann, Johannes},
  journal={Algorithmica},
  volume={61},
  number={4},
  pages={949--970},
  year={2011},
  publisher={Springer}
}

@incollection{guo2008improved,
  title={Improved algorithms for bicluster editing},
  author={Guo, Jiong and H{\"u}ffner, Falk and Komusiewicz, Christian and Zhang, Yong},
  booktitle={Theory and Applications of Models of Computation},
  pages={445--456},
  year={2008},
  publisher={Springer}
}
